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June 30, 20266 min readTax Credits

Your CPA Said You Weren't Eligible for the R&D Tax Credit. Are You Sure?

One of the most common things we hear from prospective clients is: “My CPA told us we don't qualify.” Sometimes that's correct. But surprisingly often, the business was never formally evaluated in the first place.

Valoria Consulting Team
Business owner reviewing documents with a pen, evaluating R&D tax credit eligibility for a second opinion

The big picture

Companies that may qualify for valuable tax incentives often end up paying more tax than necessary simply because they accepted an initial answer without a second review. Before you take “no” as final, it is worth asking whether a formal R&D evaluation was ever actually performed.

The problem with quick eligibility decisions

The Research & Development (R&D) tax credit is one of the most misunderstood incentives in the tax code. Many business owners hear the term “research and development” and immediately assume it only applies to pharmaceutical companies, scientists, or large technology corporations.

That's not how the credit works. Many businesses qualify because they perform qualifying activities every day without realizing it:

Develop or improve software
Design new products
Improve manufacturing processes
Create custom technical solutions
Test prototypes
Solve engineering or technical challenges
Improve existing products or systems

Why some businesses are told they don't qualify

There are several reasons a business may receive an incorrect answer:

No formal evaluation was performed

Many tax preparers are focused on preparing returns and ensuring compliance. An R&D credit analysis often requires separate interviews, documentation reviews, and technical discussions that go beyond the scope of a standard tax return engagement.

The business doesn't “look like” a traditional R&D company

We've spoken with manufacturers, contractors, engineers, software developers, and product companies that assumed they were ineligible because they weren't conducting laboratory research. The IRS definition is much broader than most people realize.

The rules have changed

Tax laws evolve, and eligibility standards can change over time. A company that was previously told it didn't qualify may have facts today that support a different conclusion.

Prior advisors may not specialize in tax incentives

Being an excellent CPA does not automatically mean someone specializes in R&D tax credits. Just as businesses seek specialized legal opinions, specialized tax reviews can identify opportunities that may have been overlooked.

The cost of assuming “no”

A missed credit can impact your cash flow, hiring plans, expansion initiatives, technology investments, and overall profitability.

What we have seen: businesses discover that they qualified for credits in prior years after being told they were ineligible. The issue wasn't that they failed to qualify. The issue was that no one performed a comprehensive review.

Why a second opinion can be valuable

A second opinion isn't about replacing your CPA. It's about making sure every available tax opportunity has been explored. The right review can help determine:

  • Whether qualifying activities exist
  • Which expenses may qualify
  • Whether prior years should be evaluated
  • What documentation is needed to support a claim

For many business owners, the biggest risk isn't claiming a credit they don't qualify for. It's failing to claim a credit they do.

The bottom line

If your CPA told you that you weren't eligible for the R&D tax credit, that may be correct. But before accepting that conclusion, ask an important question: was a formal R&D tax credit evaluation actually performed?

If the answer is no, a second opinion may reveal opportunities that were never considered. When it comes to tax incentives, the most expensive answer is often the one that goes unquestioned.

This article is general information, not tax advice. R&D eligibility depends on your specific facts. Talk with a qualified professional before claiming the credit or evaluating prior years.

Was your eligibility ever actually reviewed?

Valoria works alongside CPAs and tax attorneys to identify qualifying R&D activities, calculate eligible expenses, and prepare audit-ready documentation. Get a second opinion and find out what you qualify for before you pay anything.